Machine learning-assisted hydroenzyme engineering for PET depolymerization

  • Geyer, R., Jambeck, JR & Law, KL Production, use, and fate of all plastics ever made. Sciences. case. 3e1700782 (2017).

    advertisements
    Article – Commodity

    Google Scholar

  • Santos, RG, Machovsky-Capuska, GE & Andrades, R. Plastic ingestion as an evolutionary trap: toward a comprehensive understanding. Science 37356–60 (2021).

    advertisements
    CAS
    Article – Commodity

    Google Scholar

  • MacLeod, M., Arp, HPH, Tekman, M.B. & Jahnke, A. The global threat from plastic pollution. Science 37361-65 (2021).

    advertisements
    CAS
    Article – Commodity

    Google Scholar

  • Chen, C. C., Dai, L., Ma, L. & Guo, R. T. Enzymatic hydrolysis of plant biomass and synthetic polymers. nat. Reverend Kim. 4114-126 (2020).

  • George, N. & Kurian, T. Recent developments in the chemical recycling of post-consumer polyethylene terephthalate waste. Indiana flag. Precision. 5314185-14198 (2014).

    CAS
    Article – Commodity

    Google Scholar

  • Simon, N et al. A binding global agreement to address the life cycle of plastics. Science 37343-47 (2021).

    advertisements
    CAS
    Article – Commodity

    Google Scholar

  • Kawai, F., Kawabata, T. & Oda, M. Current knowledge about the enzymatic hydrolysis of PET and its potential application to waste stream management and other areas. Microbiol application. Biotechnology. 1034253-4268 (2019).

    CAS
    Article – Commodity

    Google Scholar

  • I’ll see you. and Gloria, R.; Achieving a circular bio-economy for plastic. Science 37349-50 (2021).

    Article – Commodity

    Google Scholar

  • Ru, J., Huo, Y. & Yang, Y. Microbial decomposition and valorization of plastic waste. In front of me. microbiol; https://doi.org/10.3389/fmicb.2020.00442 (2020).

  • Ellis, L.D. et al. Chemical and biological catalysis for plastic recycling and recycling. nat. Catal. 4539-556 (2021).

    CAS
    Article – Commodity

    Google Scholar

  • Taniguchi, E.; et al. Biodegradation of PET: current status and application aspects. ACS Catal. https://doi.org/10.1021/acscatal.8b05171 (2019).

  • Tournier, in et al. PET polymerase is designed to break down and recycle plastic bottles. temper nature 580216–219 (2020).

    advertisements
    CAS
    Article – Commodity

    Google Scholar

  • Inderthal, H., Tai, S. L. & Harrison, STL Non-hydrodegradable plastics–a multidisciplinary look at plastic bio-oxidation. Biotechnology trends. 3912-23 (2021).

    CAS
    Article – Commodity

    Google Scholar

  • Yoshida, S et al. Polyethylene terephthalate degrades and ingests. Science 3511196–1199 (2016).

    advertisements
    CAS
    Article – Commodity

    Google Scholar

  • Chen, C. C. et al. General features of enhancing the enzymatic activity of poly(ethylene terephthalate) hydrolysis. nat. Catal. https://doi.org/10.1038/s41929-021-00616-y (2021).

  • Worm, B., Lotze, H. K., Jubinville, I., Wilcox, C. & Jambeck, J. Plastic as a persistent marine pollutant. that. Rev. Env. resources.https://doi.org/10.1146/annurev-environ-102016-060700 (2017).

  • Son, H.F. et al. Rational protein engineering of thermally stable PETase from Ideonella sakaiensis to degrade PET with high efficiency. ACS Catal. 93519–3526 (2019).

    CAS
    Article – Commodity

    Google Scholar

  • Austin, H.P. et al. Characterization and engineering of plastic-degrading aromatic polyesters. Brooke. Natal Acad. Sciences. United States of America 115E4350 – E4357 (2018).

    CAS
    Article – Commodity

    Google Scholar

  • Joe, S et al. Structural insight into the molecular mechanism of poly(ethylene terephthalate) degradation. nat. common. 9382 (2018).

    advertisements
    Article – Commodity

    Google Scholar

  • Han, X et al. Structural insight into the catalytic mechanism of PET hydrolase. nat. common. 82106 (2017).

    advertisements
    Article – Commodity

    Google Scholar

  • Furukawa, M., Kawakami, N., Oda, K. & Miyamoto, K. Acceleration of the enzymatic decomposition of poly(ethylene terephthalate) by coating the surface with surfactants. Science. mite. Science. 114018-4025 (2018).

    CAS
    Article – Commodity

    Google Scholar

  • Coy and others. Computational redesign of PETase for plastic biodegradation under ambient conditions by the GRAPE strategy. ACS Catal. https://doi.org/10.1021/acscatal.0c05126 (2021).

  • Chen, K., Hu, Y., Dong, X. & Sun, Y. Molecular insights into the enhanced performance of PET-formed pitases toward PET degradation. ACS Catal. 117358-7370 (2021).

    CAS
    Article – Commodity

    Google Scholar

  • Shroff, R et al. Discovery of new gain-of-function mutations guided by structure-based deep learning. ACS synth. Biol. 92927 – 2935 (2020).

    CAS
    Article – Commodity

    Google Scholar

  • Kauai, F et al. California novel2+-Activated, thermo-stabilized polyesterase capable of hydrolyzing PET from Saccharomonospora viridis AHK190. Microbiol application. Biotechnology. 9810053-10064 (2014).

    CAS
    Article – Commodity

    Google Scholar

  • Weissmann, D. Handbook of Applied Plastics Engineering: Processing, Materials, and Applications 2nd ed. (ed. Kutz, M.) 717-741 (William Andrew Publishing, 2017).

  • Wallace, Ni et al. The highly crystalline PET found in plastic water bottles does not support the growth of beta-producing bacteria Ideonella sakaiensis. Environment. microbiol; re come back. 12578-582 (2020).

    CAS
    Article – Commodity

    Google Scholar

  • Wei, R. & Zimmermann, W. Microbial enzymes for recycling unconventional petroleum plastics: how far are we? microbe. Biotechnology. 101308-1322 (2017).

    CAS
    Article – Commodity

    Google Scholar

  • Kawai, F., Kawabata, T. & Oda, M. Current status and perspectives on polyethylene terephthalate hydrolysates available for biocycling. ACS Sustainability. Science. M. 88894-8908 (2020).

    CAS
    Article – Commodity

    Google Scholar

  • Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillatory mode. enzyme methods. 276307-326 (1997).

    CAS
    Article – Commodity

    Google Scholar

  • Emsley, P. & Cowtan, K. Coot: Model Building Tools for Molecular Drawings. Acta Crystallogger. Dr.. Biol. plurilogger. 602126-2132 (2004).

    Article – Commodity

    Google Scholar

  • Lipchner, Dr.; et al. Determination of molecular structure using X-rays, neutrons, and electrons: recent developments in Phoenix. Acta Crystallogger. sect. D, structure. Biol. 75861–877 (2019).

    CAS
    Article – Commodity

    Google Scholar

  • Fujita, M et al. Transcription and nucleotide sequences of the malt-tetrusing amylase (amyP) gene of Pseudomonas stutzeri mo-19. J. Bacteriol. 1711333-1339 (1989).

    CAS
    Article – Commodity

    Google Scholar

  • Leonard, SP et al. Genetic engineering of the bee gut microbiome with a toolkit for the modular assembly of broadband plasmids. ACS synth. Biol. 71279–1290 (2018).

    CAS
    Article – Commodity

    Google Scholar